Part 1. Analyzing DNA, RNA, and Protein Sequences In Databases

1. Introduction
2. Access to Sequence and Literature Databases
3. Pairwise Sequence Alignment
4. Basic Local Alignmnet Search Tool (BLAST)
5. Advanced BLAST Searching

Part 2. Genome-Wide Analysis of RNA and Protein

6. Genome-wide Analysis of Gene Expression
7. Gene Expression: Microarrays
8. Protein Analysis and Proteomics
9. Protein Structure
10. Multiple Sequence Alignment
11. Molecular Phylogeny

Part 3. Genome Analysis

12. Completed Genomes and the Tree of Life
13. Completed Genomes: Viruses
14. Completed Genomes: Bacteria and Archaea
15. Eukaryotic Genomes: Fungi
16. Eukaryotic Genomes: From Parasites to Primates
17. The Human Genome
18. Human Disease
19. Conclusions

Appendix 1. GCG for Protein and DNA Analysis
Glossary
Index